I'm not a fan of the Pro-Bowl but you need to keep in mind that RG3 has some nice rushing stats and they count the same as passing, they don't limit you to 10 yards rushing and make you stop and don't count rushing TDs as 3 points.
RG3 has 3,852 yards with 26 TDs and 7 turnovers (5 INTs and 2 Fumbles lost)
Romo has 4,734 yards with 27 TDs and 19 turnovers (again, ints and fumbles lost)
So basically RG3 has scored about the same amount of TDs and took much better care of the ball.
Again...it's the Pro-Bowl, so who cares...