As far as speed scores, while I wasn't impressed with the Felix Jones pick back in April, I don't think you should put a big emphasis on speed scores when it comes to a back like him.
First, the cowboys themselves said on draft day that he's not an every down back. He's got a specific skill set that will come in handy as a role player. There's nothing wrong with that (although I would argue that such a role does not warrent a first round pick).
Second, the most prominent speed-score "failure" on their list is none other than Brian Westbrook (4.57, weighs 200 lbs, 91.7 speed score). If you compare players by how similar their skillsets are, I think Jones is very close to Westbrook. That's not to say that he will be the next Westbrook (who I think is currently the most valuable back in the game after LDT). There is also speculation that Westbrook simply did not run well at the combine and the same is said of Jones.
Third, Emmitt Smith's speed score (221 lbs, 4.7 dash) was 90.6, just a tad bit behind Westbrook's. Yes, he succeeded. But the reason that data only goes back so far in the FO analysis is that speed scores from prior eras aren't the same as now. Speed in general has gone up in the last decade (Emmit ran in 1990, the first year from which 40 dash times at the combine are considered "official"). Players now work on their 40 yard dashes in speed schools with track coachs. Players did not do so back in the day, and it may be that Emmitt's speed score was better relative to his draft class than it is now.
Lastly, this metric enjoys a .45 correlation with yards, carries and DPAR. Roughly speaking, that means that it explains 45% of a back's performance. If you work in statistics like me, you know that .45 in the real world is good, but not great. That means there's a bunch of other stuff that determines how good a college back will be in the NFL. The nice thing about this metric is that it is intuitive and probably better than LOOKING AT JUST 40 YARD DASH TIMES. In other words, guys like LaMont Jordan, Rudi Johnson, Correll Buckhalter and Brandon Jacobs shouldn't fall on draft boards due to weak 40 times, because, compared to their weight, their 40 times were actually quite good.